- Laboratory of Anatomy and Anatomy of Surgery
- Laboratory of Histology-Embryology
- Department of Pathology (Laboratory of General Pathology & Pathological Anatomy)
- Laboratory of Forensic Medicine &Toxicology
- Laboratory of Radiology-Radiodiagnostics
- Laboratory of Medical Physics and Digital Innovation
- Laboratory of Computing, Medical Informatics and Biomedical - Imaging Technologies
- 1st Laboratory of Nuclear Medicine (Temporarily Off)
- 2nd Laboratory of Nuclear Medicine
- 3rd Laboratory of Nuclear Medicine
- Laboratory of Oncological Radiotherapy
- Laboratory of Experimental Physiology
- 1st Laboratory of Pharmacology
- Laboratory of Clinical Pharmacology
- Museum for the History of Medicine
- 1st Laboratory of Medical Biology and Genetics
- Laboratory of General Biology (Extraordinary Independent Chair)
- Laboratory of Biological Chemistry
- Laboratory of Biochemistry, AHEPA General Hospital of Thessaloniki
- 1st Laboratory of Microbiology
- 2nd Laboratory of Microbiology
- Laboratory of Microbiology
- Laboratory of Hygiene, Social & Preventive Medicine and Medical Statistics
- Laboratory of Primary Health Care, General Medicine and Health Research Services
- 1st Department of Internal Medicine
- 2nd Department of Internal Medicine
- 3rd Department of Internal Medicine
- 4th Department of Internal Medicine
- 1st Propedeutic Department of Internal Medicine
- 2nd Propedeutic Department of Internal Medicine
- 1st Department of Nephrology
- 2nd Department of Nephrology
- 1st Department of Cardiology
- 2nd Univesity Department of Cardiology-Aristotle University of Thessaloniki
- 3rd Department of Cardiology
- Department of Chest Medicine
- Department of Respiratory Deficiency
- Department of Oncology
- 1st Department of Dermatology
- 2nd Department of Dermatology
- 1st Propaedeutic Department of Surgery
- 2nd Propaedeutic Department of Surgery
- 1st Department of Surgery
- 2nd Department of Surgery
- 3rd Department of Surgery
- 4th Department of Surgery
- 5th Department of Surgery
- Department of Anesthesiology and Intensive Care
- Department of Transplantation and Surgery
- 1st Department of Urology
- 2nd Department of Urology
- 1st Department of Orthopedics
- 2nd Department of Orthopedics
- 3rd Department of Orthopedics
- 1st Department of Obstetrics and Gynecology
- 2nd Department of Obstetrics and Gynecology
- 3rd Department of Obstetrics and Gynecology
- Department of Plastic Surgery
- Department of Cardiothoracic Surgery
- Department of Vascular Surgery
- 1st Department of Neurology
- 2nd Department of Neurology
- 3rd Department of Neurology
- Laboratory of Clinical Neurophysiology
- 1st Department of Neurological Surgery
- 2nd Department of Neurological Surgery
- 1st Department of Psychiatry
- 2nd Department of Psychiatry
- 3rd Department of Psychiatry
- 1st Department of Otorhinolaryngology
- 2nd Department of Otorhinolaryngology
- 1st Department of Ophthalmology
- 2nd Department of Ophthalmology
- Laboratory of Experimental Ophthalmology